From the Publisher:
Presented here is a methodologically-oriented treatment of molecular dynamics fundamentals as they relate to hard spheres and Lennard-Jones atoms. The focus is on ``why'' molecular dynamics works and how it is used to estimate properties. The structure revolves around Aristotle's theory of causation in which a complete explanation for a thing necessarily encompasses four causes: material, formal, efficient and final cause.
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- Letychevskyi O, Volkov V, Tarasich Y, Sokolova G and Peschanenko V (2022). Modern Methods and Software Systems of Molecular Modeling and Application of Behavior Algebra, Cybernetics and Systems Analysis, 58:3, (454-464), Online publication date: 1-May-2022.
- Peng S, Zhang X, Su W, Dong D, Lu Y, Liao X, Lu K, Yang C, Liu J, Zhu W and Wei D (2020). High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 17:3, (804-816), Online publication date: 1-May-2020.
- Zohdi T (2019). Electrodynamic machine-learning-enhanced fault-tolerance of robotic free-form printing of complex mixtures, Computational Mechanics, 63:5, (913-929), Online publication date: 1-May-2019.
- Lee H, Yang Y, Chang W and Bellucci S (2018). Atomic-Scale Finite Element Method for Analyzing the Sensitivity of Graphyne-Based Resonators, Journal of Nanomaterials, 2018, Online publication date: 1-Jan-2018.
- Dzwinel W, Wcisło R, Yuen D and Miller S (2016). PAM, ACM Transactions on Modeling and Computer Simulation, 26:3, (1-21), Online publication date: 29-Jan-2016.
- Alekseeva U, Winkler R and Sutmann G (2016). Hydrodynamics in adaptive resolution particle simulations, Journal of Computational Physics, 314:C, (14-34), Online publication date: 1-Jun-2016.
- Hiller T, Sanchez de La Lama M and Brinkmann M (2016). Stochastic Rotation Dynamics simulations of wetting multi-phase flows, Journal of Computational Physics, 315:C, (554-576), Online publication date: 15-Jun-2016.
- Costa L (2016). Meaningful timescales from Monte Carlo simulations of particle systems with hard-core interactions, Journal of Computational Physics, 326:C, (773-779), Online publication date: 1-Dec-2016.
- Eltaher M, Hamed M, Sadoun A and Mansour A (2014). Mechanical analysis of higher order gradient nanobeams, Applied Mathematics and Computation, 229:C, (260-272), Online publication date: 25-Feb-2014.
- Dorn M, e Silva M, Buriol L and Lamb L (2014). Three-dimensional protein structure prediction, Computational Biology and Chemistry, 53:PB, (251-276), Online publication date: 1-Dec-2014.
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- Wcisło R, Gosztyła P and Dzwinel W N-body parallel model of tumor proliferation Proceedings of the 2010 Summer Computer Simulation Conference, (160-167)
- Thomas S, Tang X, Tapia L and Amato N Simulating protein motions with rigidity analysis Proceedings of the 10th annual international conference on Research in Computational Molecular Biology, (394-409)
- Klein P and Zimmerman J (2006). Coupled atomistic-continuum simulations using arbitrary overlapping domains, Journal of Computational Physics, 213:1, (86-116), Online publication date: 20-Mar-2006.
- Alexander F, Garcia A and Tartakovsky D (2005). Algorithm refinement for stochastic partial differential equations, Journal of Computational Physics, 207:2, (769-787), Online publication date: 10-Aug-2005.
- Alexander F, Tartakovsky D and Garcia A (2005). Noise in Algorithm Refinement Methods, Computing in Science and Engineering, 7:3, (32-38), Online publication date: 1-May-2005.
- Shu J, Wang B and Zheng W Cluster-Based parallel simulation for large scale molecular dynamics in microscale thermophysics Proceedings of the Second international conference on Parallel and Distributed Processing and Applications, (200-211)
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- Song G and Amato N Using motion planning to study protein folding pathways Proceedings of the fifth annual international conference on Computational biology, (287-296)
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