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Approximate Nearest Neighbor under edit distance via product metrics

Published:11 January 2004Publication History

ABSTRACT

We present a data structure for the approximate nearest neighbor problem under edit metric (which is defined as the minimum number of insertions, deletions and character substitutions needed to transform one string into another). For any l ≥ 1 and a set of n strings of length d, the data structure reports a 3l-approximate Nearest Neighbor for any given query string q in O(d) time. The space requirement of this data structure is roughly O(nd1/(l+1)), i.e., strongly subexponential. To our knowledge, this is the first data structure for this problem with both o(n) query time and storage subexponential in d.

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  1. Approximate Nearest Neighbor under edit distance via product metrics

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      • Published in

        cover image ACM Conferences
        SODA '04: Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms
        January 2004
        1113 pages
        ISBN:089871558X

        Publisher

        Society for Industrial and Applied Mathematics

        United States

        Publication History

        • Published: 11 January 2004

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        Overall Acceptance Rate411of1,322submissions,31%

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