skip to main content
10.1145/3209978.3210166acmconferencesArticle/Chapter ViewAbstractPublication PagesirConference Proceedingsconference-collections
demonstration

A2A: Benchmark Your Clinical Decision Support Search

Published:27 June 2018Publication History

ABSTRACT

Clinical Decision Support (CDS) systems aim to assist clinicians in their daily decision-making related to diagnosis, tests, and treatments of patients by providing relevant evidence from the scientific literature. This promise however is yet to be fulfilled, with search for relevant literature for a given patient condition still being an active research topic. The TREC CDS track was designed to address this research gap. We developed a platform to facilitate experimentation and hypothesis testing for information retrieval researchers working on this topic. It provides a large range of query and document processing techniques that are explored in the biomedical search domain.

References

  1. E. Amigó, J. Carrillo-de Albornoz, M. Almagro-Cádiz, J. Gonzalo, J. Rodr'ıguez-Vidal, and F. Verdejo . 2017. EvALL: Open Access Evaluation for Information Access Systems SIGIR. 1301--1304. Google ScholarGoogle ScholarDigital LibraryDigital Library
  2. W. Chapman, W. Bridewell, P. Hanbury, G. Coopera, and B. Buchanan . 2001. A Simple Algorithm for Identifying Negated Findings and Diseases in Discharge Summaries. J Biomed Inform. Vol. 34, 5 (2001), 301--310.Google ScholarGoogle ScholarCross RefCross Ref
  3. G. Gkotsis, S. Velupillai, A. Oellrich, H. Dean, M. Liakata, and R. Dutta . 2016. Don't Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records. In CLPsych at NAACL. San Diego, CA, 95--105.Google ScholarGoogle Scholar
  4. H. Gurulingappa, A. Bauer, L. Toldo, C. Schepers, and G. Megaro . 2016. Semi-Supervised Information Retrieval System for Clinical Decision Support TREC. Gaithersburg, MD.Google ScholarGoogle Scholar
  5. S. Karimi, S. Falamaki, and V. Nguyen . 2016. CSIRO at TREC Clinical Decision Support Track. In TREC. Gaithersburg, MD.Google ScholarGoogle Scholar
  6. S. Karimi, D. Martinez, S. Ghodke, L. Zhang, H. Suominen, and L. Cavedon . 2011. Search for Medical Records: NICTA at TREC 2011 Medical Track TREC. Gaithersburg, MD.Google ScholarGoogle Scholar
  7. B. Koopman, G. Zuccon, and J. Russell . 2017. A Task-oriented Search Engine for Evidence-based Medicine SIGIR. Shinjuku, Tokyo, Japan, 1329--1332. Google ScholarGoogle ScholarDigital LibraryDigital Library
  8. V. Nguyen, S. Karimi, S. Falamaki, and C. Paris . 2018. Benchmarking Clinical Decision Support Search. (2018). deftempurl%https://arxiv.org/abs/1801.09322 tempurlGoogle ScholarGoogle Scholar
  9. K. Roberts, D. Demner-Fushman, E. Voorhees, and W. Hersh . 2016 a. Overview of the TREC 2016 Clinical Decision Support Track TREC. Gaithersburg, MD.Google ScholarGoogle Scholar
  10. K. Roberts, M. Simpson, D. Demner-Fushman, E. Voorhees, and W. Hersh . 2016 b. State-of-the-art in Biomedical Literature Retrieval for Clinical Cases: A Survey of the TREC 2014 CDS Track. Inf Retr. Vol. 19, 1--2 (2016), 113--148. Google ScholarGoogle ScholarDigital LibraryDigital Library
  11. K. Roberts, M. Simpson, E. Voorhees, and W. Hersh . 2015. Overview of the TREC 2015 Clinical Decision Support Track TREC. Gaithersburg, MD.Google ScholarGoogle Scholar
  12. C. Schardt, M. Adams, T. Owens, S. Keitz, and P. Fontelo . 2007. Utilization of the PICO framework to improve searching PubMed for clinical questions. BMC Med Inform Decis Mak. Vol. 7, 16 (2007).Google ScholarGoogle Scholar
  13. M. Simpson, E. Voorhees, and W. Hersh . 2014. Overview of the TREC 2014 Clinical Decision Support Track TREC. Gaithersburg, MD.Google ScholarGoogle Scholar

Index Terms

  1. A2A: Benchmark Your Clinical Decision Support Search

          Recommendations

          Comments

          Login options

          Check if you have access through your login credentials or your institution to get full access on this article.

          Sign in
          • Published in

            cover image ACM Conferences
            SIGIR '18: The 41st International ACM SIGIR Conference on Research & Development in Information Retrieval
            June 2018
            1509 pages
            ISBN:9781450356572
            DOI:10.1145/3209978

            Copyright © 2018 Owner/Author

            Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for third-party components of this work must be honored. For all other uses, contact the Owner/Author.

            Publisher

            Association for Computing Machinery

            New York, NY, United States

            Publication History

            • Published: 27 June 2018

            Check for updates

            Qualifiers

            • demonstration

            Acceptance Rates

            SIGIR '18 Paper Acceptance Rate86of409submissions,21%Overall Acceptance Rate792of3,983submissions,20%

          PDF Format

          View or Download as a PDF file.

          PDF

          eReader

          View online with eReader.

          eReader